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part of the Data driven Life Sciences [DDLS] PhD research school. Keywords: PhD position, Metagenomics, human gut microbiota, shotgun metagenomics, microbiota evolution, microbiome, long read sequencing
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, microbiota evolution, microbiome, long read sequencing, Metagenome assembled genomes, strain level metagenomics, high resolution metagenomics You who are admitted to doctoral studies at the Faculty of Medicine
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) and single-nucleus RNA sequencing (MGI G400, Parse, and SmartSeq3) data are currently being generated from up to 300 cases. This cohort will constitute one of the largest spatial multi-omics CRC
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quantitative and population genetics; good knowledge and practical skills in genetic and genomic analysis (both, marker data and sequence data), phenology and plant pathology; a sound understanding of
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investigates how whole-genome duplication reshapes genome evolution using comparative pangenomics across multiple natural diploid–polyploid species pairs. The student will analyse a unique dataset of chromosome
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pangenomics of polyploids Project description This PhD project investigates how whole-genome duplication reshapes genome evolution using comparative pangenomics across multiple natural diploid–polyploid species
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, proteomics, long-read sequencing). Familiarity with machine learning approaches, particularly artificial neural networks, and their application to biological data. Experience with workflow management systems
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antibody sequences for functional testing. The doctoral student project and the duties of the doctoral student In this PhD project, the student will use and develop new tools for multimodal data to study
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, Sanger sequencing and phylogenetic analysis of viral sequence data Previous experience of research (e.g. research preparatory courses/ experience of work in research project or similar) Working with
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of manufacturing process parameters. Rather than running expensive physical experiments at random, the goal is to design experiment sequences that maximally reduce uncertainty about which process conditions lead to