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Field
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, yet little is known about the structure or function of most of these complex metabolites. The PhD student will analyse large metagenomic datasets from bacteria associated with patients to discover new
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. The position is based at the IGB in Stechlin, Germany. Your tasks Laboratory analysis of planktonic and benthic microorganisms including shotgun metagenomics Field sampling on Elbe Estuary along the salinity
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of markers• Task 5.1: Perform traditional indicator of contamination assays (e.g., E. coli).• Task 5.2: Quantify novel genetic viral and fungi markers identified in task 3.• Task 5.3: Conduct NGS/metagenomic
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. The position is based at the IGB in Stechlin, Germany. Your tasks Laboratory analysis of planktonic and benthic microorganisms including shotgun metagenomics Field sampling on Elbe Estuary along the salinity
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knowledge of root physiology, rhizosphere ecology, and/or biogeochemistry is an advantage. Experience with tree experiments, mass spectrometry, and/or metagenomics is beneficial. The ideal candidate is team
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sequencing, metatranscriptomics and metagenomics to link taxa and functional genes (pmoA, mmoX, phnJ). Depth-resolved analyses will reveal which methanotroph taxa align more strongly with sediment fluxes
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samples, including methane, CO, and isoprene, will be measured by gas chromatography, while DNA sequencing and metagenomic analyses will identify functional genes responsible for trace gas oxidation
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peptides Perform and support experimental studies across the METAMIC project, including notably metagenomic sequencing of field study samples (from clinical or environmental use cases) Application
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metagenomic data) in relation to health outcomes Ability to liaise between disciplines, bridging between medical infrastructure and clinical as well as basic research Experience or interest in data analysis
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identification of microbes, including metagenomics and bioinformatics. Training Training will include cultivation of soil bacteria, quantitative PCR, amplicon-based sequencing, whole genome sequencing, and