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Uppsala University, Department of Organismal Biology The Department of Organismal Biology teach about, and explores the evolution, development and function on the organismal level. We study the
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will use machine learning methods to develop affinity ligands. These methods have been transformative for protein design, allowing generation of novel proteins which can suit a precise need. In this 4
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collaboratively. Adaptability is also essential, as research directions and methodologies evolve, requiring flexibility and openness to learning new techniques. You should have the willingness to develop technical
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of MSI advances our understanding of complex brain processes. The prospective PhD candidate collects brain MSI data and develops novel machine learning methods in connection to generative models such as
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) biological knowledge about GRNs from bioinformatics and system biology, (b) graph theory and topological data analysis for network modeling from mathematics, and (c) robust machine learning (ML) and GenAI from
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well as the clinical activities at the Karolinska University Hospital, unique access to international expertise in machine learning, state-of-the-art imaging, diverse patient cohorts, and relevant computational
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spectrum, in topics in virology and immunology, and currently specializes in computational biology focusing on developing methods and applications of deep learning for protein sequence and structure, as
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, and will apply deep learning to integrate the analysis flows. The PhD student will develop the method and apply to numerous in-house samples of environmental sequences, pushing the boundaries of RNA
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at the single-cell level, using tools from optimal transport, mathematical optimization, and machine learning. In addition to method development, the work includes applying and benchmarking algorithms on both
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interdisciplinary project. The project concerns algorithm design, implementations of algorithms, and simulated and biological data analysis. The student is expected to learn a bit of relevant molecular biology to