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The Department of biochemstry and biophysics. The National Facility for In Situ Sequencing (ISS), located at SciLifeLab in Solna, provides state-of-the-art ISS technology to researchers across
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Solna in Stockholm. In the Marklund lab (marklundlab.com ), we investigate how sequence information in biological macromolecules governs recognition, binding, and dynamical structure. We combine high
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). Particular emphasis is placed on HPC-supported computing of sequencing data into assembled transcripts (de novo assembly is a frequent need), and further downstream translation of the ORFs of said transcripts
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bioinformatics, with a particular emphasis on performing analysis of high-dimensional data, which can be sequencing and/or imaging-based. Experience working with AI and machine learning approaches are considered a
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project: Computational methods for complex SV detection using sequencing data Main supervisor: Kristoffer Sahlin, ksahlin@math.su.se . Co-supervisor: Adam Ameur, adam.ameur@igp.uu.se . In the Department
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Genetics at the Swedish Museum of Natural History is offering a two-year Postdoc position focused on understanding the evolution of homoploid hybrid lineages. Work tasks We will focus on sequencing
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with other group members, collecting amino acid sequence data from across multiple fully sequenced genomes. The student will conduct a variety of measures of protein phenotypic diversity, in the form
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(or at all) by previous and ongoing genome sequencing efforts. The aim is to generate the first reasonably unbiased view of the insect tree of life, based on a backbone of some 5,000 genomes ‘decorated’ with
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-lab methods to profile RNA fragments from environmental samples. The methods will cover both next-generation sequencing-based methods but also targeted approaches such as qPCR and rolling circle
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evolutionary analysis. A central component of the research will be to develop machine learning and deep learning methods trained on coding sequences and protein structure to extract patterns in data and to draw