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algorithms to detect complex structural variants in humans using long DNA sequencing reads. A structural variant (SV) is a large-scale alteration in the genome that involves rearranged, deleted, or inserted
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the developmental rules underlying phenotypic variation. The successful postdoctoral fellow will develop and implement an empirical framework that utilizes data-driven algorithms to learn relationships between past
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these transcripts into protein sequence databases. Guide the development of proteogenomics through implementation of novel algorithms and computational analysis infrastructure Development of tools to support clinical
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to the advancement of precision medicine in oncology. A typical workday may involve writing and running code to pre-process sequencing data on a compute server, applying statistical models and algorithms to construct
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within tissues using our in-house developed spatial transcriptomics-based technology (Spatial VDJ). Using established and newly developed algorithms, we map B cell evolution within tissues, including class
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at the single-cell level, using tools from optimal transport, mathematical optimization, and machine learning. In addition to method development, the work includes applying and benchmarking algorithms on both
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education . Skills and personal qualities In addition to the aforementioned requirements for the position: A demonstrable computational competence, comfortable with using and developing algorithms, data
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technologies like normalizing flows, graph neural networks, and transformers to represent distributions over trees, to improve MSC estimation. These technologies have shown significant improvements in
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) is responsible for supporting and providing assistance to SciLifeLab’s ecosystem regarding training. The position is located in Umeå, but we work distributed across Sweden, and you will have colleagues
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degree. As part of your employment as a doctoral student, you may have departmental duties corresponding to up to 20 % of full-time employment, distributed throughout your study period, and result in a